Status
The Cyanophora paradoxa CCMP329 genome assembly and gene models have not been determined by the JGI, but were downloaded from the publication supplemental datashare (cyanophora.rutgers.edu) on September 25, 2019. Please note that this copy of the genome is not maintained by Rutgers University and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome. The mitochondrial and chloroplast assemblies, identified from fasta annotation, were separated from the nuclear genome and are available from the download section.
Summary statistics for the Cyanophora paradoxa CCMP329
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 98.35 |
Sequencing read coverage depth | |
# of contigs | 704 |
# of scaffolds | 704 |
# of scaffolds >= 2Kbp | 704 |
Scaffold N50 | 132 |
Scaffold L50 (Mbp) | 0.21 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 1.23, 0.90, 0.88 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 2332 | 1730 |
transcript | 1529 | 1095 |
exon | 150 | 93 |
intron | 89 | 68 |
description: | ||
protein length (aa) | 510 | 365 |
exons per gene | 10.22 | 8 |
# of gene models | 25518 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Price DC, Goodenough UW, Roth R, Lee JH, Kariyawasam T, Mutwil M, Ferrari C, Facchinelli F, Ball SG, Cenci U, Chan CX, Wagner NE, Yoon HS, Weber APM, Bhattacharya D
Analysis of an improved Cyanophora paradoxa genome assembly.
DNA Res. 2019 Aug 1;26(4):287-299. doi: 10.1093/dnares/dsz009
Price DC, Goodenough UW, Roth R, Lee JH, Kariyawasam T, Mutwil M, Ferrari C, Facchinelli F, Ball SG, Cenci U, Chan CX, Wagner NE, Yoon HS, Weber APM, Bhattacharya D
Analysis of an improved Cyanophora paradoxa genome assembly.
DNA Res. 2019 Aug 1;26(4):287-299. doi: 10.1093/dnares/dsz009
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Glaucophyta
Funding
This project was not sequenced at the JGI.