Info • Conticribra weissflogii CCMP 1336

Status

The Conticribra weissflogii CCMP 1336 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were provided by the authors, Linzhou Li et al. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 3,292 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by the authors and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 231.50
Sequencing read coverage depth 500x
# of contigs 29249
# of scaffolds 25512
# of scaffolds >= 2Kbp 16395
Scaffold N50 2049
Scaffold L50 (Mbp) 0.03
# of gaps 3737
% of scaffold length in gaps 1.2%
Three largest Scaffolds (Mbp) 0.49, 0.39, 0.38


Gene Models FilteredModels1
length (bp) of: average median
gene 1640 1269
transcript 1498 1143
exon 705 456
intron 128 99
description:
protein length (aa) 499 381
exons per gene 2.13 1
# of gene models 19531


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.