Status
Assembly v1 (May 2014) is a standard draft assembly of Illumina gDNA reads. A total of 37 scaffolds and 33.5 Mbp were assembled using AllPathsLG.
Summary statistics for the Coniochaeta sp. PMI_546 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 33.51 |
| Sequencing read coverage depth | 102x |
| # of contigs | 68 |
| # of scaffolds | 37 |
| # of scaffolds >= 2Kbp | 27 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 2.74 |
| # of gaps | 31 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 4.34, 3.64, 3.26 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 31533 | 30866 | 97.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1813 | 1571 |
| transcript | 1655 | 1424 |
| exon | 620 | 386 |
| intron | 96 | 66 |
| description: | ||
| protein length (aa) | 468 | 385 |
| exons per gene | 2.67 | 2 |
| # of gene models | 11346 |
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
