Status
The Cladosiphon okamuranus S strain genome assembly and gene models have not been determined by the JGI, but were downloaded from the Okinawa Institute of Science and Technology (OIST) on October 31, 2019. Please note that this copy of the genome is not maintained by OIST and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Cladosiphon okamuranus release
are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 169.73 |
Sequencing read coverage depth | |
# of contigs | 3835 |
# of scaffolds | 732 |
# of scaffolds >= 2Kbp | 732 |
Scaffold N50 | 77 |
Scaffold L50 (Mbp) | 0.51 |
# of gaps | 3103 |
% of scaffold length in gaps | 1.7% |
Three largest Scaffolds (Mbp) | 7.34, 6.33, 4.40 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 8325 | 6229 |
transcript | 2472 | 1773 |
exon | 218 | 141 |
intron | 567 | 426 |
description: | ||
protein length (aa) | 754 | 520 |
exons per gene | 11.36 | 9 |
# of gene models | 14750 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nishitsuji K, Arimoto A, Iwai K, Sudo Y, Hisata K, Fujie M, Arakaki N, Kushiro T, Konishi T, Shinzato C, Satoh N, Shoguchi E
A draft genome of the brown alga, Cladosiphon okamuranus, S-strain: a platform for future studies of 'mozuku' biology.
DNA Res. 2016 Dec;23(6):561-570. doi: 10.1093/dnares/dsw039
Nishitsuji K, Arimoto A, Iwai K, Sudo Y, Hisata K, Fujie M, Arakaki N, Kushiro T, Konishi T, Shinzato C, Satoh N, Shoguchi E
A draft genome of the brown alga, Cladosiphon okamuranus, S-strain: a platform for future studies of 'mozuku' biology.
DNA Res. 2016 Dec;23(6):561-570. doi: 10.1093/dnares/dsw039
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals:Heterokonta Ochrophyta Phaeophyta
Funding
This project was not sequenced at the JGI.