Status
The genome sequence and gene models of Chrysochromulina tobin have not been determined by the JGI, but were downloaded from LANL Greenhouse, on June 20, 2017. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated.
Summary statistics for the Chrysochromulina tobin CCMP291
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 59.07 |
| Sequencing read coverage depth | 111x |
| # of contigs | 3412 |
| # of scaffolds | 3412 |
| # of scaffolds >= 2Kbp | 3294 |
| Scaffold N50 | 798 |
| Scaffold L50 (Mbp) | 0.02 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.12, 0.11, 0.10 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1899 | 1407 |
| transcript | 1492 | 1137 |
| exon | 661 | 447 |
| intron | 318 | 185 |
| description: | ||
| protein length (aa) | 466 | 356 |
| exons per gene | 2.26 | 2 |
| # of gene models | 16770 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Hovde BT, Deodato CR, Hunsperger HM, Ryken SA, Yost W, Jha RK, Patterson J, Monnat RJ Jr, Barlow SB, Starkenburg SR, Cattolico RA
Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae).
PLoS Genet. 2015;11(9):e1005469. doi: 10.1371/journal.pgen.1005469
Hovde BT, Deodato CR, Hunsperger HM, Ryken SA, Yost W, Jha RK, Patterson J, Monnat RJ Jr, Barlow SB, Starkenburg SR, Cattolico RA
Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae).
PLoS Genet. 2015;11(9):e1005469. doi: 10.1371/journal.pgen.1005469
Funding
This project was not sequenced at the JGI.
