Status
The genome sequence and gene models of Chondrus crispus have not been determined by the JGI, but were downloaded from NCBI, on March 27, 2018. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Chondrus crispus release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 104.98 |
| Sequencing read coverage depth | 14x |
| # of contigs | 3065 |
| # of scaffolds | 926 |
| # of scaffolds >= 2Kbp | 926 |
| Scaffold N50 | 126 |
| Scaffold L50 (Mbp) | 0.24 |
| # of gaps | 2139 |
| % of scaffold length in gaps | 0.8% |
| Three largest Scaffolds (Mbp) | 1.17, 1.03, 0.96 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1238 | 984 |
| transcript | 1184 | 933 |
| exon | 698 | 390 |
| intron | 80 | 2 |
| description: | ||
| protein length (aa) | 351 | 259 |
| exons per gene | 1.70 | 1 |
| # of gene models | 9808 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Collén J, Porcel B, Carré W, Ball SG, Chaparro C, Tonon T, Barbeyron T, Michel G, Noel B, Valentin K, Elias M, Artiguenave F, Arun A, Aury JM, Barbosa-Neto JF, Bothwell JH, Bouget FY, Brillet L, Cabello-Hurtado F, Capella-Gutiérrez S, Charrier B, Cladière L, Cock JM, Coelho SM, Colleoni C, Czjzek M, Da Silva C, Delage L, Denoeud F, Deschamps P, Dittami SM, Gabaldón T, Gachon CM, Groisillier A, Hervé C, Jabbari K, Katinka M, Kloareg B, Kowalczyk N, Labadie K, Leblanc C, Lopez PJ, McLachlan DH, Meslet-Cladiere L, Moustafa A, Nehr Z, Nyvall Collén P, Panaud O, Partensky F, Poulain J, Rensing SA, Rousvoal S, Samson G, Symeonidi A, Weissenbach J, Zambounis A, Wincker P, Boyen C
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.
Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5247-52. doi: 10.1073/pnas.1221259110
Collén J, Porcel B, Carré W, Ball SG, Chaparro C, Tonon T, Barbeyron T, Michel G, Noel B, Valentin K, Elias M, Artiguenave F, Arun A, Aury JM, Barbosa-Neto JF, Bothwell JH, Bouget FY, Brillet L, Cabello-Hurtado F, Capella-Gutiérrez S, Charrier B, Cladière L, Cock JM, Coelho SM, Colleoni C, Czjzek M, Da Silva C, Delage L, Denoeud F, Deschamps P, Dittami SM, Gabaldón T, Gachon CM, Groisillier A, Hervé C, Jabbari K, Katinka M, Kloareg B, Kowalczyk N, Labadie K, Leblanc C, Lopez PJ, McLachlan DH, Meslet-Cladiere L, Moustafa A, Nehr Z, Nyvall Collén P, Panaud O, Partensky F, Poulain J, Rensing SA, Rousvoal S, Samson G, Symeonidi A, Weissenbach J, Zambounis A, Wincker P, Boyen C
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.
Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5247-52. doi: 10.1073/pnas.1221259110
Funding
This project was not sequenced at the JGI.
