Info • Chloropicon primus CCMP1205

Status

The Chloropicon primus CCMP12055 genome assembly and gene models have not been determined by the JGI, but were downloaded from NCBI on October 31, 2019. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 135 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 17.40
Sequencing read coverage depth 391.0x
# of contigs 20
# of scaffolds 20
# of scaffolds >= 2Kbp 20
Scaffold N50 6
Scaffold L50 (Mbp) 1.09
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.88, 1.76, 1.48


Gene Models FilteredModels1
length (bp) of: average median
gene 1578 1269
transcript 1499 1191
exon 984 643
intron 154 124
description:
protein length (aa) 500 397
exons per gene 1.52 1
# of gene models 8504


Genome Reference(s)

Funding

This project was not sequenced at the JGI.