Status
The Chlorella sp. A99 genome assembly and gene models have not been determined by the JGI, but were downloaded from Okinawa Institute of Science and Technology on October 31, 2019.Please note that this copy of the genome is not maintained by OIST and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Chlorella sp. A99 v1.0 release
are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 40.93 |
Sequencing read coverage depth | |
# of contigs | 1846 |
# of scaffolds | 82 |
# of scaffolds >= 2Kbp | 65 |
Scaffold N50 | 9 |
Scaffold L50 (Mbp) | 1.73 |
# of gaps | 1764 |
% of scaffold length in gaps | 3.3% |
Three largest Scaffolds (Mbp) | 4.00, 3.45, 2.55 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 4156 | 3225 |
transcript | 1842 | 1389 |
exon | 184 | 116 |
intron | 211 | 174 |
description: | ||
protein length (aa) | 614 | 463 |
exons per gene | 9.99 | 8 |
# of gene models | 8298 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Hamada M, Schröder K, Bathia J, Kürn U, Fraune S, Khalturina M, Khalturin K, Shinzato C, Satoh N, Bosch TC
Metabolic co-dependence drives the evolutionarily ancient Hydra-Chlorella symbiosis.
Elife. 2018 May 31;7():. doi: 10.7554/eLife.35122
Hamada M, Schröder K, Bathia J, Kürn U, Fraune S, Khalturina M, Khalturin K, Shinzato C, Satoh N, Bosch TC
Metabolic co-dependence drives the evolutionarily ancient Hydra-Chlorella symbiosis.
Elife. 2018 May 31;7():. doi: 10.7554/eLife.35122
Links
- JGI Algae EcoGroup Portal
- JGI Archaeplastida EcoGroup Portal
- JGI PhyloGroup Portals: Viridiplantae Chlorophyta Trebouxiophyceae
Funding
This project was not sequenced at the JGI.