Status
[Jan 2015] The Chionosphaera apobasidialis 52639 genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010) .
Summary statistics for the Chionosphaera apobasidialis
52639 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 21.83 |
| Sequencing read coverage depth | 94.3 |
| # of contigs | 1183 |
| # of scaffolds | 398 |
| # of scaffolds >= 2Kbp | 288 |
| Scaffold N50 | 25 |
| Scaffold L50 (Mbp) | 0.29 |
| # of gaps | 785 |
| % of scaffold length in gaps | 5.8% |
| Three largest Scaffolds (Mbp) | 1.19, 0.56, 0.54 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 41329 | 37721 | 91.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1540 | 1327 |
| transcript | 1308 | 1100 |
| exon | 251 | 152 |
| intron | 57 | 51 |
| description: | ||
| protein length (aa) | 372 | 300 |
| exons per gene | 5.21 | 4 |
| # of gene models | 9875 |
Collaborators
Joey Spatafora, Oregon State University
Jon Magnuson, Pacific Northwest National Lab
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
