Status
The genome Chaetomium globosum was sequenced by the Broad Institute. For more information on the project please see the Broad Institute Chaetomium globosum Database. JGI Eukaryotic tools were setup to assist with manual curation and comparative analysis of thermophillic fungi.
The Chaetomium globosum assembly contains 34.9Mb and 11,124 predicted gene models with the following statistics:
| Genome Assembly | v1.0 |
| Genome size(Mbp) | 34.9 |
| Sequencing read coverage depth | 7x |
| Esimated # of contigs | 2453 |
| # of scaffolds | 37 |
| # of scaffolds >2 | 32 |
| Scaffold N/L50 | 4/4.7 Mbp |
| Three largest Scaffolds (Mbp) | 6.6 5.0 4.7 |
| Gene Models | v1.0 |
| length (bp) of: | average |
| gene | 1,785 |
| transcript | 1,481 |
| exon | 475 |
| intron | 145 |
| description: | |
| protein length (aa) | 493 |
| exons per gene | 3.1 |
| # of gene models | 11.124 |
| Density (Genes/Mbp) | 319 |
| ESTs | Data set | # sequences | # mapped | # not to mapped | % mapped |
| ESTs | Chagl_1_Ests_GenBank | 1.557 | 1.314 | 243 | 84% |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Cuomo CA, Untereiner WA, Ma LJ, Grabherr M, Birren BW
Draft Genome Sequence of the Cellulolytic Fungus Chaetomium globosum.
Genome Announc. 2015 Feb 26;3(1):. doi: 10.1128/genomeA.00021-15
Berka RM, Grigoriev IV, Otillar R, Salamov A, Grimwood J, Reid I, Ishmael N, John T, Darmond C, Moisan MC, Henrissat B, Coutinho PM, Lombard V, Natvig DO, Lindquist E, Schmutz J, Lucas S, Harris P, Powlowski J, Bellemare A, Taylor D, Butler G, de Vries RP, Allijn IE, van den Brink J, Ushinsky S, Storms R, Powell AJ, Paulsen IT, Elbourne LD, Baker SE, Magnuson J, Laboissiere S, Clutterbuck AJ, Martinez D, Wogulis M, de Leon AL, Rey MW, Tsang A
Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.
Nat Biotechnol. 2011 Oct 2;29(10):922-7. doi: 10.1038/nbt.1976
Cuomo CA, Untereiner WA, Ma LJ, Grabherr M, Birren BW
Draft Genome Sequence of the Cellulolytic Fungus Chaetomium globosum.
Genome Announc. 2015 Feb 26;3(1):. doi: 10.1128/genomeA.00021-15
Berka RM, Grigoriev IV, Otillar R, Salamov A, Grimwood J, Reid I, Ishmael N, John T, Darmond C, Moisan MC, Henrissat B, Coutinho PM, Lombard V, Natvig DO, Lindquist E, Schmutz J, Lucas S, Harris P, Powlowski J, Bellemare A, Taylor D, Butler G, de Vries RP, Allijn IE, van den Brink J, Ushinsky S, Storms R, Powell AJ, Paulsen IT, Elbourne LD, Baker SE, Magnuson J, Laboissiere S, Clutterbuck AJ, Martinez D, Wogulis M, de Leon AL, Rey MW, Tsang A
Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.
Nat Biotechnol. 2011 Oct 2;29(10):922-7. doi: 10.1038/nbt.1976
Funding
This project was not sequenced at the JGI.
