Info • Cryptococcus gattii WM276

Status

The genome sequence and gene models of Cryptococcus gattii WM276 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Genome Assembly
Genome Assembly size (Mbp) 18.37
Sequencing read coverage depth complete
# of contigs 21
# of scaffolds 14
# of scaffolds >= 2Kbp 14
Scaffold N50 5
Scaffold L50 (Mbp) 1.33
# of gaps 7
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.23, 2.19, 1.98


Gene Models ExternalModels
length (bp) of: average median
gene 1890 1613
transcript 1556 1308
exon 258 151
intron 69 57
description:
protein length (aa) 519 436
exons per gene 6.03 5
# of gene models 6565


Collaborators



Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

D'Souza CA, Kronstad JW, Taylor G, Warren R, Yuen M, Hu G, Jung WH, Sham A, Kidd SE, Tangen K, Lee N, Zeilmaker T, Sawkins J, McVicker G, Shah S, Gnerre S, Griggs A, Zeng Q, Bartlett K, Li W, Wang X, Heitman J, Stajich JE, Fraser JA, Meyer W, Carter D, Schein J, Krzywinski M, Kwon-Chung KJ, Varma A, Wang J, Brunham R, Fyfe M, Ouellette BF, Siddiqui A, Marra M, Jones S, Holt R, Birren BW, Galagan JE, Cuomo CA
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.
mBio. 2011;2(1):e00342-10. doi: 10.1128/mBio.00342-10

Funding

This project was not sequenced at the JGI.