Info • Candida membranifaciens IST 626 v1.0

Status

[February 2021] The genome of Candida membranifaciens IST 626 was sequenced by Novogene Bioinformatics Technology Co. Ltd. (Hong Kong) and assembled by Margarida Palma at Instituto Superior Técnico, University of Lisbon, Portugal. The JGI Fungal Annotation pipeline was used to predict genes and provide functional annotation. The mitochondrial genome is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 11.48
Sequencing read coverage depth
# of contigs 79
# of scaffolds 55
# of scaffolds >= 2Kbp 55
Scaffold N50 7
Scaffold L50 (Mbp) 0.67
# of gaps 24
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.05, 0.98, 0.86


Gene Models FilteredModels1
length (bp) of: average median
gene 1494 1269
transcript 1467 1251
exon 1212 1044
intron 132 92
description:
protein length (aa) 489 417
exons per gene 1.21 1
# of gene models 5619


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Palma M, Mondo S, Pereira M, Vieira É, Grigoriev IV, Sá-Correia I
Genome Sequence and Analysis of the Flavinogenic Yeast Candida membranifaciens IST 626.
J Fungi (Basel). 2022 Mar 1;8(3):. doi: 10.3390/jof8030254

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.