Status
The Cafeteria roenbergensis genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on March 24, 2022. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Genome Assembly | |
Genome Assembly size (Mbp) | 36.28 |
Sequencing read coverage depth | |
# of contigs | 169 |
# of scaffolds | 169 |
# of scaffolds >= 2Kbp | 169 |
Scaffold N50 | 25 |
Scaffold L50 (Mbp) | 0.46 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 1.53, 1.35, 1.17 |
Gene Models | NCBI_nuclear_models | |
length (bp) of: | average | median |
gene | 2609 | 1811 |
transcript | 2073 | 1392 |
exon | 719 | 230 |
intron | 287 | 208 |
description: | ||
protein length (aa) | 691 | 464 |
exons per gene | 2.88 | 2 |
# of gene models | 8555 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Hackl T, Martin R, Barenhoff K, Duponchel S, Heider D, Fischer MG
Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis.
Sci Data. 2020 Jan 21;7(1):29. doi: 10.1038/s41597-020-0363-4
Hackl T, Martin R, Barenhoff K, Duponchel S, Heider D, Fischer MG
Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis.
Sci Data. 2020 Jan 21;7(1):29. doi: 10.1038/s41597-020-0363-4
Links
- JGI PhyloGroup Portals: Heterokonta
Bigyra Opalozoa
Funding
This project was not sequenced at the JGI.