Status
The Cadophora malorum M34 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on June 8, 2022. The JGI Annotation Pipeline was used to add functional annotation to this genome. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 363 models from Cadophora malorum M34 and the generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Genome Assembly | |
Genome Assembly size (Mbp) | 48.85 |
Sequencing read coverage depth | 203x |
# of contigs | 760 |
# of scaffolds | 760 |
# of scaffolds >= 2Kbp | 721 |
Scaffold N50 | 127 |
Scaffold L50 (Mbp) | 0.12 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.93, 0.48, 0.47 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1598 | 1356 |
transcript | 1412 | 1179 |
exon | 438 | 253 |
intron | 86 | 57 |
description: | ||
protein length (aa) | 471 | 393 |
exons per gene | 3.22 | 3 |
# of gene models | 16037 |
Genome Reference(s)
Stefanovic E, Scully C, Roader J, Murphy F, Houbraken J, Vu D
Draft Genome Sequences of Two Cadophora Strains Isolated from Water and a Nonalcoholic Beverage Ingredient.
Microbiol Resour Announc. 2021 Jul;10(26):e0036821. doi: 10.1128/MRA.00368-21
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Leotiomycetes Helotiales
- JGI EcoGroup Portal: Endophytic Fungi