Status
The genome sequence and gene prediction of Blumeria graminis f. sp. hordei Race1 have not been determined by the Joint Genome Institute (JGI), but were obtained from Lamprinos Frantzeskakis. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by Frantzeskakis et. al. and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Blumeria graminis f. sp. hordei
Race1 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 116.48 |
| Sequencing read coverage depth | 1x |
| # of contigs | 99 |
| # of scaffolds | 99 |
| # of scaffolds >= 2Kbp | 99 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 3.91 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 9.43, 6.82, 5.93 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2157 | 1884 |
| transcript | 2023 | 1759 |
| exon | 680 | 423 |
| intron | 70 | 55 |
| description: | ||
| protein length (aa) | 470 | 379 |
| exons per gene | 2.98 | 3 |
| # of gene models | 7239 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Frantzeskakis L, Kracher B, Kusch S, Yoshikawa-Maekawa M, Bauer S, Pedersen C, Spanu PD, Maekawa T, Schulze-Lefert P, Panstruga R
Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen.
BMC Genomics. 2018 May 22;19(1):381. doi: 10.1186/s12864-018-4750-6
Frantzeskakis L, Kracher B, Kusch S, Yoshikawa-Maekawa M, Bauer S, Pedersen C, Spanu PD, Maekawa T, Schulze-Lefert P, Panstruga R
Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen.
BMC Genomics. 2018 May 22;19(1):381. doi: 10.1186/s12864-018-4750-6
Funding
This project was not sequenced at the JGI.
