Info • Blastomyces dermatitidis ER-3

Status

The genome sequence and gene models of Blastomyces dermatitidis ER-3 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.


Genome Assembly
Genome Assembly size (Mbp) 66.61
Sequencing read coverage depth 9.4X
# of contigs 593
# of scaffolds 27
# of scaffolds >= 2Kbp 27
Scaffold N50 5
Scaffold L50 (Mbp) 5.55
# of gaps 566
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 10.30, 8.46, 7.67


Gene Models ExternalModels
length (bp) of: average median
gene 2648 2336
transcript 2429 2100
exon 813 415
intron 112 85
description:
protein length (aa) 450 366
exons per gene 2.99 2
# of gene models 11539


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Muñoz JF, Gauthier GM, Desjardins CA, Gallo JE, Holder J, Sullivan TD, Marty AJ, Carmen JC, Chen Z, Ding L, Gujja S, Magrini V, Misas E, Mitreva M, Priest M, Saif S, Whiston EA, Young S, Zeng Q, Goldman WE, Mardis ER, Taylor JW, McEwen JG, Clay OK, Klein BS, Cuomo CA
The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia.
PLoS Genet. 2015 Oct;11(10):e1005493. doi: 10.1371/journal.pgen.1005493

Funding

This project was not sequenced at the JGI.