Status
The genome sequence and gene models of Aspergillus udagawae IFM 46973 have not been determined by the JGI, but were downloaded from NCBI on Sep 16, 2016. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Aspergillus udagawae release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.19 |
| Sequencing read coverage depth | |
| # of contigs | 1029 |
| # of scaffolds | 1029 |
| # of scaffolds >= 2Kbp | 148 |
| Scaffold N50 | 25 |
| Scaffold L50 (Mbp) | 0.43 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.02, 0.97, 0.92 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1846 | 1467 |
| transcript | 1600 | 1323 |
| exon | 487 | 263 |
| intron | 109 | 61 |
| description: | ||
| protein length (aa) | 533 | 441 |
| exons per gene | 3.28 | 3 |
| # of gene models | 9999 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Kusuya Y, Takahashi-Nakaguchi A, Takahashi H, Yaguchi T
Draft Genome Sequence of the Pathogenic Filamentous Fungus Aspergillus udagawae Strain IFM 46973T.
Genome Announc. 2015 Aug 6;3(4):. doi: 10.1128/genomeA.00834-15
Kusuya Y, Takahashi-Nakaguchi A, Takahashi H, Yaguchi T
Draft Genome Sequence of the Pathogenic Filamentous Fungus Aspergillus udagawae Strain IFM 46973T.
Genome Announc. 2015 Aug 6;3(4):. doi: 10.1128/genomeA.00834-15
Funding
This project was not sequenced at the JGI.
