Status
The genome sequence and gene prediction of Aspergillus niger CBS 513.88 were not determined by the JGI, but were downloaded from NCBI). Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Aspergillus niger CBS 513.88
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 33.98 |
| Sequencing read coverage depth | 7.5x |
| # of contigs | 471 |
| # of scaffolds | 19 |
| # of scaffolds >= 2Kbp | 19 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 2.53 |
| # of gaps | 452 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 3.63, 3.63, 2.93 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1574 | 1334 |
| transcript | 1324 | 1089 |
| exon | 370 | 176 |
| intron | 99 | 70 |
| description: | ||
| protein length (aa) | 441 | 363 |
| exons per gene | 3.57 | 3 |
| # of gene models | 14097 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wösten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88.
Nat Biotechnol. 2007 Feb;25(2):221-31. doi: 10.1038/nbt1282
Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wösten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88.
Nat Biotechnol. 2007 Feb;25(2):221-31. doi: 10.1038/nbt1282
Funding
This project was not sequenced at the JGI.
