Status
[February 2021] The Aspergillus endophyticus DTO 354-I2 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 27.50 |
| Sequencing read coverage depth | 100.7x |
| # of contigs | 279 |
| # of scaffolds | 249 |
| # of scaffolds >= 2Kbp | 237 |
| Scaffold N50 | 40 |
| Scaffold L50 (Mbp) | 0.22 |
| # of gaps | 30 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.81, 0.62, 0.60 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 35489 | 34654 | 97.6% |
| Ests | est.fasta | 122283290 | 121590337 | 99.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1842 | 1590 |
| transcript | 1678 | 1438 |
| exon | 532 | 321 |
| intron | 78 | 59 |
| description: | ||
| protein length (aa) | 456 | 377 |
| exons per gene | 3.16 | 3 |
| # of gene models | 10426 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
