Status
This genome was sequenced by Gianoulis et al. in Department of Life Sciences, Imperial College London, London, UK (Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides). Please check their data use policies.
Summary statistics for the Ascocoryne sarcoides NRRL50072
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 34.17 |
| Sequencing read coverage depth | 38x |
| # of contigs | 219 |
| # of scaffolds | 219 |
| # of scaffolds >= 2Kbp | 193 |
| Scaffold N50 | 27 |
| Scaffold L50 (Mbp) | 0.40 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.15, 1.02, 0.93 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1695 | 1388 |
| transcript | 1491 | 1227 |
| exon | 493 | 277 |
| intron | 103 | 58 |
| description: | ||
| protein length (aa) | 497 | 409 |
| exons per gene | 3.03 | 3 |
| # of gene models | 10672 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Gianoulis TA, Griffin MA, Spakowicz DJ, Dunican BF, Alpha CJ, Sboner A, Sismour AM, Kodira C, Egholm M, Church GM, Gerstein MB, Strobel SA
Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides.
PLoS Genet. 2012;8(3):e1002558. doi: 10.1371/journal.pgen.1002558
Gianoulis TA, Griffin MA, Spakowicz DJ, Dunican BF, Alpha CJ, Sboner A, Sismour AM, Kodira C, Egholm M, Church GM, Gerstein MB, Strobel SA
Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides.
PLoS Genet. 2012;8(3):e1002558. doi: 10.1371/journal.pgen.1002558
Funding
This project was not sequenced at the JGI.
