Info • Armillaria nabsnona CMW6904 v1.0

Status

[June 2018] The Armillaria nabsnona CMW6904 genome was sequenced with PacBio, assembled with Falcon (v 1.8.8), and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Armillaria nabsnona v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 62.72
Sequencing read coverage depth 105.75x
# of contigs 85
# of scaffolds 85
# of scaffolds >= 2Kbp 85
Scaffold N50 9
Scaffold L50 (Mbp) 2.69
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.52, 4.34, 4.19


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 77233 74774 96.8%
Ests est.fasta 158223318 157366926 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1701 1491
transcript 1386 1202
exon 227 139
intron 64 55
description:
protein length (aa) 397 333
exons per gene 6.11 5
# of gene models 19015


Collaborators

 

Francis Martin, INRA Nancy, France

László Nagy, Hungarian Academy of Sciences

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Sahu N, Indic B, Wong-Bajracharya J, Merényi Z, Ke HM, Ahrendt S, Monk TL, Kocsubé S, Drula E, Lipzen A, Bálint B, Henrissat B, Andreopoulos B, Martin FM, Bugge Harder C, Rigling D, Ford KL, Foster GD, Pangilinan J, Papanicolaou A, Barry K, LaButti K, Virágh M, Koriabine M, Yan M, Riley R, Champramary S, Plett KL, Grigoriev IV, Tsai IJ, Slot J, Sipos G, Plett J, Nagy LG
Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria.
Nat Microbiol. 2023 Aug 7;():. doi: 10.1038/s41564-023-01448-1

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.