Status
[Dec 2014] The Acremonium strictum genome was sequenced
using the Illumina platform and assembled with AllPathsLG release
version R49403 (Gnerre
et al., 2010).
Mitochondrial genome was assembled separately and is available in
the downloads section.
Summary statistics for the Acremonium strictum DS1bioAY4a
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.79 |
| Sequencing read coverage depth | 120x |
| # of contigs | 81 |
| # of scaffolds | 13 |
| # of scaffolds >= 2Kbp | 12 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 3.56 |
| # of gaps | 68 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 5.19, 4.68, 3.88 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator assembled Illumina ESTs | 35537 | 35474 | 99.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1772 | 1571 |
| transcript | 1622 | 1437 |
| exon | 573 | 358 |
| intron | 84 | 61 |
| description: | ||
| protein length (aa) | 474 | 409 |
| exons per gene | 2.83 | 2 |
| # of gene models | 13158 |
Collaborators
Colleen
Hansel at the Woods Hole Oceanographic Institution.
Cara
M. Santelli at the Smithsonian Institution, Washington, DC.
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Steindorff AS, Aguilar-Pontes MV, Robinson AJ, Andreopoulos B, LaButti K, Kuo A, Mondo S, Riley R, Otillar R, Haridas S, Lipzen A, Grimwood J, Schmutz J, Clum A, Reid ID, Moisan MC, Butler G, Nguyen TTM, Dewar K, Conant G, Drula E, Henrissat B, Hansel C, Singer S, Hutchinson MI, de Vries RP, Natvig DO, Powell AJ, Tsang A, Grigoriev IV
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses.
Commun Biol. 2024 Sep 12;7(1):1124. doi: 10.1038/s42003-024-06681-w
Steindorff AS, Aguilar-Pontes MV, Robinson AJ, Andreopoulos B, LaButti K, Kuo A, Mondo S, Riley R, Otillar R, Haridas S, Lipzen A, Grimwood J, Schmutz J, Clum A, Reid ID, Moisan MC, Butler G, Nguyen TTM, Dewar K, Conant G, Drula E, Henrissat B, Hansel C, Singer S, Hutchinson MI, de Vries RP, Natvig DO, Powell AJ, Tsang A, Grigoriev IV
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses.
Commun Biol. 2024 Sep 12;7(1):1124. doi: 10.1038/s42003-024-06681-w
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
