In the "1KFG: Deep Sequencing of Ecologically-relevant Dikarya"
project (CSP1974), we are sequencing keystone lineages of
plant-interacting fungi and saprophytic fungi that are of special
ecological importance for understanding terrestrial ecosystems. In
addition, comparative genome analysis with saprotrophic,
mycorrhizal and pathogenic fungi will provide new insights into the
specific and conserved adaptations associated with each fungal
lifestyle.
Kavinia alboviridis
OMC1854
Kavinia alboviridis is a soil and wood-inhabiting
basidiomycete fungus with a wide temperate to boreal distribution
in the northern hemisphere. Its fruiting bodies are effused and
spiny, so it is a hydnoid corticioid species. The greenish color of
the fruiting body is rare among corticioid fungi, so this species
is easy to identify in the field. It is not easy to spot, though,
since it is far from abundant, even considered rare, and the small
fruiting bodies develop under much decayed wood or in soil.
Kavinia alboviridis belongs to the family Lentariaceae in
the order Gomphales, Phallomycetidae, Agaricomycetes (Hosaka et al.
2006). Members of the Lentariaceae appear to be saprotrophs and
able to decay wood. Their type of rot has not been studied. A few
other genomes of saprotrophic Phallomycetidae have been published
and would indicate white rot: Sphaerobolus
stellatus of the Gaestrales (Kohler et al. 2015), as well
as litter decomposing Gomphales species Ramaria rubella and Gautieria morchelliformis
(Miyauchi et al. 2020). As the first Lentariaceae genome,
Kavinia alboviridis will help to understand diversity and
evolution of wood decay in the Agaricomycetes, the most important
group of wood decay fungi.
The heterokaryotic genome strain OMC1854 derives from a spore
print of a fruiting body collected in Helsinki, Finland, where it
grew on a decayed birch log (herbarium specimen Miettinen 22923.1,
H).
Researchers who wish to publish analyses using data from
unpublished CSP genomes are respectfully required to contact the PI
and JGI to avoid potential conflicts on data use and coordinate
other publications with the CSP master paper(s).
References:
- Hosaka K, Bates ST, Beever RE, Castellano MA, Colgan W, Domínguez LS, Nouhra ER, Geml J, Giachini AJ, Kenney SR, Simpson NB, Spatafora JW, Trappe JM (2006) Molecular phylogenetics of the gomphoid-phalloid fungi with an establishment of the new subclass Phallomycetidae and two new orders. Mycologia 98 (6):949-959. doi:10.3852/mycologia.98.6.949
- Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canback B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Dore J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, Hogberg N, Johansson T, Khouja H-R, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Peter M, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A, Mycorrhizal Genomics Initiative C, Tunlid A, Grigoriev IV, Hibbett DS, Martin F (2015) Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nature Genetics 47:410-415. doi:10.1038/ng.3223
- Miyauchi S, Kiss E, Kuo A, Drula E, Kohler A, Sánchez-García M, Morin E, Andreopoulos B, Barry KW, Bonito G, Buée M, Carver A, Chen C, Cichocki N, Clum A, Culley D, Crous PW, Fauchery L, Girlanda M, Hayes RD, Kéri Z, LaButti K, Lipzen A, Lombard V, Magnuson J, Maillard F, Murat C, Nolan M, Ohm RA, Pangilinan J, Pereira MdF, Perotto S, Peter M, Pfister S, Riley R, Sitrit Y, Stielow JB, Szöllősi G, Žifčáková L, Štursová M, Spatafora JW, Tedersoo L, Vaario L-M, Yamada A, Yan M, Wang P, Xu J, Bruns T, Baldrian P, Vilgalys R, Dunand C, Henrissat B, Grigoriev IV, Hibbett D, Nagy LG, Martin FM (2020) Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications 11 (1):5125. doi:10.1038/s41467-020-18795-w